As police inspector Yamato Kansuke pursues a certain man in the snowy mountains of Nagano, a shadow suddenly appears in his field of vision. While he's distracted, a rifle bullet fired by someone grazes his left eye and causes an avalanche accompanied by a roar. Ten months later, Kansuke, having miraculously survived the avalanche, receives a report that a researcher at the Nobeyama National Astronomical Observatory has been attacked.

A detective who's also a public security agent and a member of a shadowy organization juggles his triple identities.

Kogoro's detective agency receives a mysterious phone call. Someone on the other end warns about a bomb and leaves behind a code, which if Conan can decipher the riddle, he can stop the bomb. An adventure begins for Conan and the Detective Boys, taking place at a soccer match between Hideo Akagi of the Tokyo Spirits and Ryusuke Higo of Big Osaka.

On a dark night, the Japanese police is raided by a spy. Different countries' intelligence agencies - such as England's MI6, Germany's BDN, and America's CIA - as well as the FBI's secret files are going to be taken, but public safety officers lead by Tooru Amuro arrive just in time. The spy steals a car and escapes. The spy and Amuro are then locked in a dead heat on the highway, and just as it is about to cause an accident with multiple cars, the spy's car is hit by FBI agent Shuichi Akai's rifle bullet and falls of the roadway. The next day, Conan and his friends go to a newly-remodeled aquarium in Tokyo. Under the main attraction, a Ferris wheel, Conan finds an attractive woman alone and injured. Her left and right eyes are different colors.

After a sudden explosion at Edge of Ocean island in Tokyo, Tōru Amuro, codename Zero, begins to investigate. Meanwhile, private eye Kogorō is arrested as a suspect, so Conan Edogawa conducts his own investigation to prove his innocence, but Amuro stands in his way.

Lina Inverse and her sidekick Naga the Serpent are happily enjoying lunch when the entire town ducks under cover before an invasion of Marlene Culvert and her legion of bloodthirsty dragons. The cause of the invasion? Marlene is in a feud with her father, the king, over her allowance. Lina leaps into action to defend the village against Marlene, her tetrad knights and her dragons, but her dependable Dragon Slave spell fails her. Right when she thinks she has won, the real battle has just begun.

Nube gets a new student called Jun Kagami, a shy boy who has just transferred to Doumori Elementary School. Due to his insecurities, Jun believes that his only friend is a mysterious clown entity that lives inside mirrors. It is up to Nube to find out the true nature of this clown.